{"id":108,"date":"2019-07-29T19:28:24","date_gmt":"2019-07-29T11:28:24","guid":{"rendered":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/?p=108"},"modified":"2025-11-12T09:58:46","modified_gmt":"2025-11-12T01:58:46","slug":"publications","status":"publish","type":"post","link":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/?p=108","title":{"rendered":"PUBLICATIONS"},"content":{"rendered":"

PUBLICATIONS-2025<\/h4>\n
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      1. Zhang, R.#, Wan, S.#, Xiong, J., Ni, L., Li, Y., Huang, Y., Li, B., Li, M., Yang, S.<\/strong>*, and Jin, F.<\/strong>*. (2025) Decoding frequency-modulated signals increases information entropy in bacterial second messenger networks<\/a>. Nat. Phys.<\/em><\/strong> 21<\/strong>, 1728-1740.<\/li>\n<\/ol>\n
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        1. \u6768\u5e05#, \u5f90\u97f5\u4e1c, \u91d1\u5e06<\/strong>*. (2025) \u5408\u6210\u751f\u7269\u5b66\u5728\u533b\u5b66\u8bca\u7597\u4e2d\u7684\u5e94\u7528\u4e0e\u4f26\u7406\u6cbb\u7406\uff1a\u6280\u672f\u7a81\u7834\u4e0e\u4ef7\u503c\u8fb9\u754c<\/a>. \u5408\u6210\u751f\u7269\u5b66.<\/em><\/strong><\/li>\n<\/ol>\n
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          1. Xiong, J.#, Wang, L.#, Lin, J.#, Ni, L., Zhang, R., Yang, S., Huang, Y., Chu, J.<\/strong>*, and Jin, F.<\/strong>*. (2025). Quantifying second-messenger information transmission in bacteria<\/a>. Nat. Phys.<\/em><\/strong> 21<\/strong>, 1009\u20131018. Research briefing:Bacterial second messengers achieve extraordinary signal capacity<\/a><\/li>\n<\/ol>\n
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            1. Zhang, J.#, Luo, Y.#, Zong, Y., Lu, S., Shi, Y.<\/strong>*, Jin, F.<\/strong>* , and Zhao, K.<\/strong>* (2025). The role of PilU in the surface behaviors of Pseudomonas aeruginosa<\/a>. mLife. 2025 Feb 23; 83-95.<\/em><\/strong><\/li>\n<\/ol>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

              PUBLICATIONS-2023<\/h4>\n
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                  1. Zhang, R.#, Huang, Y.#, Li, M., Wang, L., Li, B., Xia, A., Li, Y., Yang, S.<\/strong>*, and Jin, F.<\/strong>*. (2023). High-throughput, microscopy-based screening and quantification of genetic elements<\/a>. mLife. 2023; 1\u201312.<\/strong><\/em><\/li>\n<\/ol>\n
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                    1. Gao, Y.#, Wei, J.#, Fu, S., Xing, X., Zhang, R.<\/strong>* and Jin, F.<\/strong>*. (2023). Remotely Controllable Engineered Bacteria for Targeted Therapy of Pseudomonas aeruginosa Infection<\/a>. ACS Synth. Biol.<\/strong><\/em><\/li>\n<\/ol>\n
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                      1. Fu, S.#, Zhang, R.<\/strong>#*, Gao, Y., Xiong, J., Li, Y., Pu, L., Xia, A., and Jin, F.<\/strong>*. (2023). Programming the lifestyles of engineered bacteria for cancer therapy<\/a>. Natl. Sci. Rev.<\/strong><\/em>, nwad03.<\/li>\n<\/ol>\n
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                        1. Cao, Z.#, Zuo, W.#, Wang, L., Chen, J., Qu, Z., Jin, F.<\/strong>, and Dai, L*. (2023) Spatial profiling of microbial communities by sequential FISH with error-robust encoding<\/a>, Nat. Commun.<\/em><\/strong>, 14, 1477.<\/li>\n<\/ol>\n
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                          1. \u4ed8\u751f\u4f1f, \u91d1\u5e06<\/strong>*. (2023). \u82e5\u5e72\u88c2\u89e3\u57fa\u56e0\u76d2\u5b50\u7684\u8868\u5f81\u53ca\u5e94\u7528<\/a>. \u751f\u7269\u5de5\u7a0b\u5b66\u62a5<\/strong><\/em>, 39(3): 1142-1162.<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

                            PUBLICATIONS-2022<\/h4>\n
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                                1. Li, F., Liu, X.-Y., Ni, L.<\/strong>*, and Jin, F.*<\/strong> (2022) AIDmut-Seq: a Three-Step Method for Detecting Protein-DNA Binding Specificity<\/a>, Microbiol. Spectr.<\/em><\/strong>, 0, e03783-03722.<\/li>\n<\/ol>\n
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                                  1. Chen, W.#, Zhang, J.#, Li, F.#, Wang, C., Zhang, Y., Xia, A., Ni, L.<\/strong>*, and Jin, F.*<\/strong> (2022) Genome-Wide Analysis of Gene Expression Noise Brought About by Transcriptional Regulation in Pseudomonas aeruginosa<\/em><\/a>, mSystems<\/em><\/strong>, 0, e00963-00922.<\/li>\n<\/ol>\n
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                                    1. Xia, A.#, Zhang, R.#, Huang, Y., Ni, L., Pu, L., Li, Y., Yang, S.<\/strong>*, and Jin, F.<\/strong>* (2022) An adaptive tracking illumination system for optogenetic control of single bacterial cells<\/a>, Appl. Microbiol. Biotechnol.<\/em><\/strong>,106, 6775-6784.<\/li>\n<\/ol>\n
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                                      1. Wei, J., and Jin, F.*<\/strong> (2022). Illuminating bacterial behaviors with optogenetics.<\/a>\u00a0Curr. Opin. Solid State Mater. Sci.<\/strong><\/em>, 26, 101023.\n<\/ol>\n
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                                        1. \u674e\u98de\u65cb, \u502a\u78ca<\/strong>*, \u91d1\u5e06<\/strong>*. (2022). \u94dc\u7eff\u5047\u5355\u80de\u83cc\u4e2d\u5feb\u901f\u57fa\u56e0\u64cd\u4f5c\u5de5\u5177\u7684\u5f00\u53d1\u548c\u5e94\u7528<\/a>. \u751f\u7269\u5de5\u7a0b\u5b66\u62a5<\/strong><\/em>, 1-15.<\/li>\n<\/ol>\n<\/li>\n
                                        2. \n
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                                          1. \u9648\u6587\u8f89, \u91d1\u5e06<\/strong>*. (2022). \u94dc\u7eff\u5047\u5355\u80de\u83cc\u4e2dS\u578b\u7eff\u8113\u6746\u83cc\u7d20\u4e0e\u8367\u5149\u55dc\u94c1\u7d20\u7684\u529f\u80fd\u534f\u540c\u6027\u5206\u6790<\/a>. \u751f\u7269\u5de5\u7a0b\u5b66\u62a5<\/strong><\/em>, 1-26.<\/li>\n<\/ol>\n<\/li>\n
                                          2. \n
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                                            1. \u5f20\u4ead, \u51b7\u68a6\u751c, \u91d1\u5e06, \u8881\u6d77<\/strong>*. (2022). \u5408\u6210\u751f\u7269\u7814\u7a76\u91cd\u5927\u79d1\u6280\u57fa\u7840\u8bbe\u65bd\u6982\u8ff0<\/a>. \u5408\u6210\u751f\u7269\u5b66<\/strong><\/em>, 3(01):184-194.<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

                                              PUBLICATIONS-2021<\/span><\/p>\n

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                                                  1. Cheng, X.#, Pu, L.#, Fu, S.#, Xia, A., Huang, S., Ni, L., Xing, X., Yang, S.<\/strong>*, Jin, F.<\/strong>* (2021). Engineering Gac\/Rsm Signaling Cascade for Optogenetic Induction of the Pathogenicity Switch in Pseudomonas aeruginosa.<\/a> ACS Synth. Biol.<\/em><\/strong>, 10, 6, 1520\u20131530<\/li>\n<\/ol>\n
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                                                    1. Xia, A., Qian, M., Wang, C., Huang, Y., Liu, Z.*, Ni, L*. Jin, F.<\/strong>* (2021). Optogenetic Modification of Pseudomonas aeruginosa Enables Controllable Twitching Motility and Host Infection.<\/a> ACS Synth. Biol.<\/em><\/strong>, 10, 3, 531\u2013541.<\/li>\n<\/ol>\n
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                                                      1. Wong, GCL., Yang S., Jin, F.<\/strong>* et al.(2021). Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation<\/a>. Phys. Biol.<\/em><\/strong>, 210.75.253.170.<\/li>\n<\/ol>\n
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                                                        1. \u6768\u5e05, \u91d1\u5e06<\/strong>*. (2021). \u5355\u7ec6\u83cc\u8868\u578b\u7684\u9ad8\u901a\u91cf\u8868\u5f81\u548c\u63a7\u5236<\/a>. \u79d1\u5b66\u901a\u62a5<\/strong><\/em>, 66(03):367-383.<\/li>\n<\/ol>\n
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                                                          1. \u91d1\u5e06<\/strong>*#, \u674e\u5949\u5ead#, \u590f\u9716<\/strong>*. (2021). CRISPR\/Cas\u5728\u5b9a\u5411\u8fdb\u5316\u6280\u672f\u4e2d\u7684\u5e94\u7528<\/a>. \u96c6\u6210\u6280\u672f<\/strong><\/em>, 10(04):33-49.<\/li>\n<\/ol>\n
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                                                            1. \u91d1\u5e06<\/strong>*#, \u9ad8\u8273\u6885#, \u9ec4\u4e9a\u4f73, \u84b2\u7490, \u590f\u9716<\/strong>*. (2021). \u94dc\u7eff\u5047\u5355\u80de\u83cc\u611f\u67d3\u6cbb\u7597\u73b0\u72b6<\/a>. \u96c6\u6210\u6280\u672f<\/strong><\/em>, 10(04):50-66.<\/li>\n<\/ol>\n
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                                                              1. \u8f9b\u9896#, \u5f90\u5b9d\u742a#, \u738b\u519b\u6770#, \u5f20\u8363\u8363#, \u6e29\u6167, \u738b\u91d1\u5a1f, \u6881\u5e06, \u91d1\u5e06, \u6881\u5353, \u9ec4\u5efa\u4e1c<\/strong>*, \u9ec4\u672f\u5f3a<\/strong>*. (2021). \u7528\u4e8e\u9ad8\u5206\u8fa8\u7387\u6210\u50cf\u7684\u80ba\u5668\u5b98\u82af\u7247\u6784\u5efa\u53ca\u80ba\u708e\u6a21\u578b\u5e94\u7528\u7814\u7a76<\/a>. \u96c6\u6210\u6280\u672f<\/strong><\/em>, 10(04):126-136.<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

                                                                PUBLICATIONS-2020<\/h4>\n
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                                                                    1. Yang, S., Jin, F.<\/strong>* (2020). Characterization and control of bacterial phenotypes at the single cell level.<\/a> Chin. Sci. Bull.<\/em><\/strong>, 65: 1-17.<\/li>\n<\/ol>\n
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                                                                      1. \u84b2\u7490, \u9ec4\u4e9a\u4f73, \u6768\u5e05, \u91d1\u5e06<\/strong>* (2020). \u5408\u6210\u751f\u7269\u5b66\u5728\u611f\u67d3\u6027\u75be\u75c5\u9632\u6cbb\u4e2d\u7684\u5e94\u7528.<\/a> \u5408\u6210\u751f\u7269\u5b66<\/em><\/strong>, 1(2): 134-149.<\/li>\n<\/ol>\n
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                                                                        1. Huang, Y., Yang, S., Chen, W., Li, F., Xia, A., Ni, L.*, Yang G.*, Jin, F.<\/strong>* (2020). A synthetic genetic circuit enables precise quantification of direct repeat deletion in bacteria.<\/a> ACS Synth. Biol.<\/em><\/strong>, 9, 1041-1050.<\/li>\n<\/ol>\n
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                                                                          1. Cheng, Z.#, Xiong, J.#, Min, D., Cheng, L., Liu, D.*, Li, W., Jin, F.<\/strong>, Yang, M., Yu H. (2020). Promoting bidirectional extracellular electron transfer of Shewanella oneidensis<\/em> MR\u20101 for hexavalent chromium reduction via elevating intracellular cAMP level.<\/a> Biotechnol. Bioeng.<\/em><\/strong>, 117, 1294-1303.<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

                                                                            PUBLICATIONS-2019<\/h4>\n
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                                                                                1. Wang, C.#, Chen, W.#, Xia, A., Zhang, R., Huang, Y., Yang, S.,Ni, L.*, Jin, F.<\/strong>* (2019). Carbon starvation induces the expression of PprB-regulated genes in Pseudomonas aeruginosa<\/em>.<\/a> Appl. Environ. Microbiol.<\/em><\/strong>, 85: e01705-19.<\/li>\n<\/ol>\n
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                                                                                  1. Han, J.#, Xia, A.#, Huang, Y., Ni, L., Chen, W., Jin, Z., Yang, S.*, Jin, F.<\/strong>* (2019). Simultaneous Visualization of Multiple Gene Expression in Single Cells Using an Engineered Multicolor Reporter Toolbox and Approach of Spectral Crosstalk Correction.<\/a> ACS Synth. Biol.<\/em><\/strong>, 8, 2536-2546.<\/li>\n<\/ol>\n
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                                                                                    1. Armbruster, CR., Lee, CK., Parker-Gilham, J., de Anda, J., Xia, A., Zhao, K., Murakami, K., Tseng, BS., Hoffman, LR., Jin, F.<\/strong>*, Harwood, CS., Wong, GCL.*, Parsek MR. * (2019). Heterogeneity in surface sensing suggests a division of labor in Pseudomonas aeruginosa<\/em> populations.<\/a> eLife<\/em><\/strong>, 8, e45084.<\/li>\n<\/ol>\n
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                                                                                      1. Xia, A.#, Yang, S.#, Zhang, R., Ni, L., Xing, X.*,Jin, F.<\/strong>* (2019).Imaging the Separation Distance between the Attached Bacterial Cells and the Surface with a Total Internal Reflection Dark-Field Microscope.<\/a> Langmuir<\/strong><\/em>, 35, 8860-8866.<\/li>\n<\/ol>\n
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                                                                                        1. Lee, EY., Zhang, C., Di, DJ., Jin, F.<\/strong>, Connell W., Hung, M., Malkoff, N., Veksler, V., Gilliet, M., Ren, P., Wong, GCL.* (2019). Helical antimicrobial peptides assemble into protofibril scaffolds that present ordered dsDNA to TLR9<\/a>. Nat. Commu.<\/em><\/strong>, 10(1), 1012.<\/li>\n<\/ol>\n
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                                                                                          1. \u9ec4\u4e9a\u4f73, \u502a\u78ca, \u91d1\u5e06, \u6768\u5149<\/strong>*. (2019). \u57fa\u4e8e\u9ad8\u901a\u91cf\u663e\u5fae\u6210\u50cf\u53ca\u5206\u6790\u6280\u672f\u7684DNA\u91cd\u6392\u7814\u7a76<\/a>. \u96c6\u6210\u6280\u672f<\/strong><\/em>, 8(06):31-38.<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

                                                                                            PUBLICATIONS-2018<\/h4>\n
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                                                                                                1. Xia, A.#, Han, J. #, Ni, L., Yang, S.*, Jin, F.<\/strong>* (2018). Dual-color fluorescent timer enables detection of growth-arrested pathogentic bacterium.<\/a> ACS<\/em><\/strong> Infect. Dis.<\/strong><\/em>, 4, 1666.<\/li>\n<\/ol>\n
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                                                                                                  1. Yang, S.#, Cheng X.#, Jin, Z., Xia, A., Ni, L., Zhang, R., Jin, F.<\/strong>* (2018). Differential production of Psl in planktonic cells leads to two distinctive attaching phenotypes in Pseudomonas aeruginosa<\/em>.<\/a> Appl.<\/strong><\/em> Environ. Microbiol.<\/em><\/strong>, 84(14), e00700-18.<\/li>\n<\/ol>\n
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                                                                                                    1. Huang, Y.#, Xia, A.#, Yang, G.*, Jin, F.<\/strong>* (2018). Bioprinting Living Biofilms through Optogenetic Manipulation<\/a>. ACS<\/em><\/strong> Synth. Biol.<\/em><\/strong>, 7, 1195-1200.<\/li>\n<\/ol>\n
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                                                                                                      1. Jin, Z.#, Li, J.#, Ni, L., Zhang, R., Xia, A., Jin, F.<\/strong>* (2018). Conditional privatization of a public siderophore enables Pseudomonas aeruginosa<\/em> to resist cheater invasion.<\/a> Nat. Commu.<\/em><\/strong>, 9, 1383.<\/li>\n<\/ol>\n
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                                                                                                        1. \u91d1\u5e06<\/strong>. (2018). \u4ece\u201c\u8bbe\u8ba1\u751f\u547d\u201d\u5230\u7406\u89e3\u751f\u547d\uff1a\u5bf9\u751f\u547d\u79d1\u5b66\u7684\u54f2\u5b66\u9610\u91ca<\/a>. \u6587\u5316\u7eb5\u6a2a<\/strong><\/em>, 01:122-131.<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

                                                                                                          PUBLICATIONS-2017<\/h4>\n
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                                                                                                              1. Pu, L.#, Yang, S.#, Xia, A., Jin, F.<\/strong>* (2017). Optogenetics Manipulation Enables Prevention of Biofilm Formation of Engineered Pseudomonas aeruginosa<\/em> on Surfaces<\/a>. ACS Synth. Biol.<\/strong><\/em>, 7, 200-208.<\/li>\n<\/ol>\n
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                                                                                                                1. \u502a\u78ca*\uff0c\u91d1\u9707\u5b87\uff0c\u6768\u5e05\uff0c\u91d1\u5e06<\/strong> (2017). \u94dc\u7eff\u5047\u5355\u80de\u83cc\u8e6d\u884c\u8fd0\u52a8\u5355\u7ec6\u80de\u5206\u6790\u65b9\u6cd5\u7684\u5efa\u7acb\u53ca\u5e94\u7528<\/a>. \u751f\u7269\u5de5\u7a0b\u5b66\u62a5<\/strong><\/em>, 33(9), 1611-1624.<\/li>\n<\/ol>\n
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                                                                                                                  1. Zhang, R.#, Xia, A.#, Ni, L., Li, FX., Jin, Z., Yang, S., Jin, F.<\/strong>* (2017). Strong shear flow persister bacteria resist mechanical washing on the surfaces of various polymer materials<\/a>. Adv. Biosyst.<\/strong><\/em>, 1, 1700161.<\/li>\n<\/ol>\n
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                                                                                                                    1. Brill-Karniely, Y., Jin, F.<\/strong>, Wong, GCL., Frenkel, D., Dobnikar, J.* (2017). Emergence of complex behavior in pili-based motility in early stages of aeruginosa surface adaptation<\/a>. Sci. Rep.<\/strong><\/em>, 7, 45467.<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

                                                                                                                      PUBLICATIONS-2016<\/h4>\n
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                                                                                                                          1. Ni, L., Yang, S., Zhang, R., Jin, Z., Chen, H., Conrad, J.C.*, Jin, F.<\/strong>* (2016). Bacteria differently deploy type-IV pili on surfaces to adapt to nutrient availability.<\/a> NPJ Biofilms Microbiomes<\/strong><\/em>, 2, 15029.<\/li>\n<\/ol>\n
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                                                                                                                            1. Cai, J., Yue, Y., Wang, Y., Jin, Z., Jin, F.<\/strong>, Wu, C.* (2016). Quantitative study of effects of free cationic chains on gene transfection in different intracellular stages.<\/a> J Control Release<\/em><\/strong>, 238, 71.<\/li>\n<\/ol>\n
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                                                                                                                              1. Lee, EY., Lee, CK., Jin, F.<\/em><\/strong>, Lande, R., Curk, T., Frenkel, D., Dobnikar, J., Gilliet, M., Wong, GCL.* (2016). A review of immune amplification via ligand clustering by self-assembled liquid-crystalline DNA complexes. <\/a>Colloid & Interface Sci.<\/strong><\/em>, 232, 17.<\/li>\n<\/ol>\n
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                                                                                                                                1. Gao, P., Yi, Z., Xing, X., Ngai, T.*, Jin, F.<\/strong>* (2016). The influence of additive-free particle spreading method on interactions between charged colloidal particles at an oil\/water interface<\/a>. Langmuir<\/em><\/strong>, 32, 4909-4916.<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

                                                                                                                                  PUBLICATIONS (24-1) – 2015~<\/a><\/h4>\n","protected":false},"excerpt":{"rendered":"

                                                                                                                                  PUBLICATIONS-2025 Zhang, R.#, Wan, S.#, Xiong, J., Ni, …<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[],"_links":{"self":[{"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/108"}],"collection":[{"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=108"}],"version-history":[{"count":148,"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/108\/revisions"}],"predecessor-version":[{"id":1078,"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/108\/revisions\/1078"}],"wp:attachment":[{"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=108"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=108"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/jin-isynbio.siat.ac.cn\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=108"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}